Foto: Jacqueline de Haas
Medical Physicist in training

Home Publications

Publications

  1. Ignacio Gonzalez-Suarez, Abena B. Redwood, Stephanie M. Perkins, Bart Vermolen, Daniel Lichtensztejin, David A. Grotsky, Lucia Morgado-Palacin, Eric Gapud, Barry P. Sleckman, Teresa Sullivan, Julien Sage, Colin L. Stewart, Sabine Mai, Susana Gonzalo, Novel roles for A-type lamins on telomere biology and the DNA damage response pathway, The EMBO Journal, In Print, 2009.
    [abstract] [html] [pdf]

  2. Vered Raz, Bart J. Vermolen, Yuval Garini, Jos J. M. Onderwater, Mieke A. Mommaas-Kienhuis, Abraham J. Koster, Ian T. Young, Hans Tanke and Roeland W. Dirks, The nuclear lamina promotes telomere aggregation and centromere peripheral localization during senescence of human mesenchymal stem cells, Journal of Cell Science, Vol. 121:24 p.4018-4028 (2008).
    [abstract] [html] [pdf]

  3. Bart J. Vermolen, Yuval Garini, Ian T. Young, Roeland W. Dirks, Vered Raz, Segmentation and Analysis of the Three-Dimensional Redistribution of Nuclear Components in Human Mesenchymal Stem Cells, Cytometry Part A, 73A, p. 816-824 (2008).
    [abstract] [references] [html] [pdf]

  4. Ian T. Young, Mohammed el Morabit, Guus Liqui Lung, Bart J. Vermolen, Photonic Calibration for Fluorescence Microscopy, Imaging, Manipulation, and Analysis of Biomolecules, Cells and Tissues VI, Daniel L. Farkas, Dan V. Nicalou, Robert C. Leif, eds., Proc. of SPIE, Vol. 6859 (2008).
    [abstract] [pdf]

  5. Rahul Sarkar, Amanda Guffei, Bart J. Vermolen, Yuval Garini, and Sabine Mai, Alterations of Centromere Positions in Nuclei of Immortalized and Malignant Mouse Lymphocytes, Cytometry Part A, 71A, p. 386-392 (2007).
    [abstract] [references] [html] [pdf]

  6. Heidelinde R. C. Dietrich, Bart J. Vermolen, Bernd Rieger, Ian T. Young, and Yuval Garini, A new optical method for characterizing single molecule interactions based on dark field microscopy, Ultrasensitive and Single-Molecule Detection Technologies II, Jorg Enderlein, Zygmunt K. Gryczynski, eds., Proc. of SPIE, Vol. 6444 (2007).
    [abstract] [pdf]

  7. A. Caporali, L. Wark, B.J. Vermolen, Y. Garini and S. Mai, Telomeric aggregates and end-to-end chromosomal fusions require myc box II, Oncogene, 26:10, p. 1398-1406 (2007).
    [abstract] [html] [pdf]

  8. Vered Raz, Françoise Carlotti, Bart J. Vermolen, Egge van der Poel, Willem C. R. Sloos, Shoshan Knaän-Shanzer, Antoine A. F. de Vries, Rob C. Hoeben, Ian T. Young, Hans J. Tanke, Yuval Garini and Roeland W. Dirks, Changes in lamina structure are followed by spatial reorganization of heterochromatic regions in caspase-8-activated human mesenchymal stem cells, Journal of Cell Science, Vol. 19:20 p.4247-4256 (2006).
    [abstract] [pdf]

  9. I.T. Young, Y. Garini, Bart J. Vermolen, G. Liqui Lung, S. Hendrichs, M. el Morabit, J. Spoelstra, E. Wilhelm, M. Zaal, Absolute Fluoresence Calibration, Imaging, Manipulation, and Analysis of Biomolecules, Cells and Tissues IV, Daniel L. Farkas, Dan V. Nicalou, Robert C. Leif, eds., Proc. of SPIE, Vol. 6088 (2006).
    [abstract] [pdf]

  10. Bart J. Vermolen, Y. Garini, S. Mai, V. Mougey, T. Fest, T. C.-Y. Chuang, A. Y.-C. Chuang, L. Wark, I. T. Young, Characterizing the three-dimensional organization of telomeres, Cytometry Part A, 67A, p. 144-150 (2005).
    [abstract] [references] [html] [pdf]

  11. Sherif F. Louis, Bart J. Vermolen, Yuval Garini, Ian T. Young, Amanda Guffei, Zelda Lichtensztejn, Fabien Kuttler, Tony C. Y. Chuang, Sharareh Moshir, Virginie Mougey, Alice Y. C. Chuang, Paul Donald Kerr, Thierry Fest, Petra Boukamp, and Sabine Mai, c-Myc induces chromosomal rearrangements through telomere and chromosome remodeling in the interphase nucleus, PNAS, 102:27, p. 9613-9618 (2005).
    [abstract] [html] [pdf] [figure only] [supporting information]

  12. Bart J. Vermolen, Ian T. Young, Alice Chuang, Landon Wark, Tony Chuang, Sabine Mai and Yuval Garini, Three-dimensional analysis tool for segmenting and measuring the structure of telomeres in mammalian nuclei, Imaging, Manipulation, and Analysis of Biomolecules and Cells: Fundamentals and Applications III, D. V. Nicolau, J. Enderlein, R. C. Leif, D. L. Farkas, R. Raghavachari, eds., Proc. of SPIE, Vol. 5699 (2005).
    [abstract] [pdf]

  13. Yuval Garini, Bart J Vermolen, Ian T Young, From micro to nano: recent advances in high-resolution microscopy, Curr. Opin. Biotech., 16:1-10 (2005).
    [abstract] [html] [pdf]

  14. B.J. Vermolen, Y. Garini, I.T. Young, 3D Restoration with multiple images acquired by a modified conventional microscope, Microsc. Res. Techniq., 64:113-125 (2004).
    [abstract] [pdf]

  15. T. Chih Yuan Chuang, S. Moshir, Y. Garini, A. Ya-Chun Chuang, I. T. Young, B. Vermolen, R. Van Den Doel, V. Mougey, M. Perrin, M. Braun, P. D. Kerr, T. Fest, P. Boukamp, S. Mai, The three-dimensional organization of telomeres in the nucleus of mammalian cells, BMC Biol., 2:12 (2004).
    [abstract] [html] [pdf]

Patents

  1. Sabine Mai, Yuval Garini, Rahul Sarkar, Bartholomeus J. Vermolen, Methods of detecting and monitoring cancer using 3D analysis of centromeres. WIPO Patent WO2008040116 (2008).
    [html]

  2. Sabine Mai, Yuval Garini, William Foulkes, Soumya Panigrahi, Bartholomeus Vermolen, Tony Chuang, Alice Chuang, Gary Jones, Methods of diagnosis or detection using three-dimensional analsysis. WIPO Patent WO2006017942 (2006), European Patent EP1799851 (2007).
    [html]

Seminars and Lectures

  1. Bart J. Vermolen, Architecture and Image Processing, Imaging Symposium, 10th anniversary of the Genomic Centre, Winnipeg, Canada, June 5th, 2009, Invited Speaker.

  2. Bart J. Vermolen, Kees Landheer, Ian T. Young, Yuval Garini One-sided interferograms: a simulation, International Society for the Advancement of Cytometry XXIV International Congress, Budapest, Hungary, May 17-21 2008.

  3. Bart Vermolen, Introduction to Digital Camaras for Microscopy, Fourier Tools, Pre-congress course on image cytometry, International Society for Analytical Cytology XXIV International Congress, Budapest, Hungary, May 17-21 2008.

  4. Bart J. Vermolen, Introduction to Quantitative Image Processing, Quantitative Image Processing: Measuring in space, Innovative Technologies In Multidisciplinary Health Research Training Workshop, Winnipeg, Canada, May 1 2008.

  5. Bart Vermolen, Ted Young, Yuval Garini, Imaging and image analysis methods for structural genomics , The 3rd Medical Imaging Symposium for Ph.D. students, Leiden, The Netherlands, January 17th 2008, Keynote Speaker.

  6. Bart J. Vermolen, Introduction to optics, Introduction to Quantitative Image Processing, Image Deconvolution, Quantitative Image Processing: Measuring in space, Innovative Technologies In Multidisciplinary Health Research Training Workshop, Winnipeg, Canada, May 15-16th May 2007.

  7. Bart J. Vermolen, Vered Raz, Roeland Dirks, Sabine Mai, Ian T. Young, Yuval Garini, 3D segmentation and analysis of nuclear bodies, Focus on Microscopy, Valencia, Spain, April 10th-13th 2007.

  8. Bart Vermolen, Hansraj Ganesh Khedoe, Zelda Lichtensztejn, Sabine Mai, Ian T. Young, Yuval Garini, 3D spectral karyotyping: deconvolutions and spectral unmixing, Focus on Microscopy, Valencia, Spain, April 10th-13th 2007.

  9. Hans J. Tanke (lecturer), Anneke Brouwer, Tsion Abraham, Vered Raz, Nico Verwoerd, Roland Eils, B.J. Vermolen and Roeland W. Dirks, Telomere localization and dynamics in normal and in cancer cells, Focus on Microscopy, Valencia, Spain, April 10th-13th 2007.

  10. Bart J. Vermolen, Hansraj Ganesh Khedoe, Yuval Garini, Ian T. Young, 3D spectral karyotyping: spectral unmixing and deconvolution, First Dutch conference on Bio-Medical Engineering, Egmond aan Zee, The Netherlands, January 19th 2007.

  11. Bart J. Vermolen, Ian T. Young, Sabine Mai, Zelda Lichtensztejn, Yuval Garini, Simultaneous imaging and classification of all chromosomal territories in the 3D interphase nucleus using spectral karyotyping, arrayCGH and Molecular Cytogenetics conference, Leuven, Belgium, September 18 2006.
    [abstract]

  12. Frank van Hooft, Bart Vermolen, Introduction to Digital Camaras for Microscopy, Pre-congress course on image cytometry, International Society for Analytical Cytology XXIII International Congress, Quebec City, Canada, May 2006.

  13. Bart J. Vermolen, Ian T. Young, Sabine Mai, Sherif Louis, Vered Raz, Yuval Garini, Image analysis for stuctural genomics, International Society for Analytical Cytology XXIII International Congress, Quebec City, Canada, May 22 2006.
    [abstract]

  14. Bart J. Vermolen, Image processing and telomere measurements, Innovative Technologies In Multidisciplinary Health Research Training Workshop, Winnipeg, Canada, April 28th 2006.

  15. Bart J. Vermolen, Image processing and telomere measurements, Innovative Technologies In Multidisciplinary Health Research Training Workshop, Winnipeg, Canada, May 19th 2005.

  16. Bart J. Vermolen, Ian T. Young, Yuval Garini, Quantitative image analysis for structural genomics, Focus On Microscopy, Jena, Germany, March 23rd 2005.
    [abstract]

  17. Bart J. Vermolen, A 3D analysis tool for segmenting and measuring the structure of telomeres in mammalian nuclei, Photonics West 2005, SPIE, San Jose, CA, USA, January 24th 2005.
    [abstract]

  18. Bart J. Vermolen, Tony Chuang, Richard L. van den Doel, Alice Chuang, Ian T. Young, Sabine Mai, Yuval Garini, 3D nuclear organization of telomeres in normal and cancerous mammalian cells, International Society for Analytical Cytology XXII International Congress, Montpellier, France, May 26 2004 (President's Award for Excellence Candidate).
    [abstract]

Posters

  1. Bart Vermolen, Hans Kanger, Vinod Subramaniam Towards a high resolution fluorescence imaging platform for the study of membranes, Netherlands MicroNano Conference 2008, Ede, The Netherlands, November 17-19 2008.
    [pdf]

  2. Bart Vermolen, Hans Kanger, Vinod Subramaniam Towards a high resolution fluorescence imaging platform for the study of membranes, Annual Dutch meeting on Molecular and Cellular Biophysics, Veldhoven, The Netherlands, September 29-30 2008.
    [pdf]

  3. Bart J. Vermolen, Ian T. Young, Vered Raz, Yuval Garini TeloView: dot-like segmentation using a Gaussian scale space approach and application, International Society for the Advancement of Cytometry XXIV International Congress, Budapest, Hungary, May 17-21 2008.
    [abstract] [pdf]

  4. Bart J. Vermolen, Vered Raz, Sabine Mai, Ian T. Young, Yuval Garini 3D image processing and analysis for structural genomics, Annual Dutch meeting on Molecular and Cellular Biophysics, Veldhoven, The Netherlands, October 1-2 2007.
    [abstract] [pdf]

  5. Bart J. Vermolen, Ian T. Young, Sabine Mai, Sherif Louis, Vered Raz & Yuval Garini Image analysis for structural genomics, arrayCGH and Molecular Cytogenetics conference, Leuven, Belgium, September 13-16 2006.
    [abstract] [pdf]

  6. Bart J. Vermolen, Ian T. Young, Sabine Mai, Zelda Lichtensztejn, Yuval Garini 3D SKY: Spectral Karyotyping in the Interphase Nucleus, International Society for Analytical Cytology XXIII International Congress, Quebec City, Canada, May 20-24 2006.
    [abstract] [pdf]

  7. Bart J. Vermolen, Yuval Garini, Sherif F. Louis, Zelda Lichtensztejn, Ian T. Young, Sabine Mai Image analysis for structural genomics in normal and cancer cells, International Society for Cellular Oncology, Belfast, 5th - 9th April 2005
    [pdf]

  8. Bart J. Vermolen, Tony Chih Yuan Chuang, Alice Ya-Chun Chaung, Ian T. Young, Sabine Mai and Yuval Garini, TeloView: A 3D analysis program for measuring the organization of telomeres in the nucleus, American Assocatiation for Cancer Research - The Role of telomeres and Telomerase in Cancer, San Francisco, USA, November 3-7 2004.
    [abstract] [pdf]

  9. Bart J. Vermolen, Yuval Garini, Ian T. Young, 3D restoration of multiple images acquired by a modified conventional microscope, International Society for Analytical Cytology XXII International Congress, Montpellier, France, May 24-25 2004 (Outstanding Poster Award Candidate).
    [abstract] [pdf]

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Last update: August 14th, 2009